Preheat oven to 375°F (190°C) and line a heavy-gauge baking sheet with silicone mat or parchment paper.
Sift whole wheat flour, cocoa powder, baking powder, and salt into a large mixing bowl to ensure uniform aeration and distribution of leavening agents.
Incorporate the Greek yogurt and maple syrup into the dry mixture using a stiff spatula until a shaggy dough forms.
Fold in the mini chocolate chips until evenly distributed throughout the mass.
Transfer the dough to a surface lightly dusted with whole wheat flour and knead manually for approximately 2 minutes until the texture is pliable and less tacky.
Divide the dough into 4 equal segments weighing approximately 110-120 grams each.
Roll each segment into an even cylinder approximately 7 inches in length and join the ends by overlapping and pressing firmly to form a torus shape.
Arrange the bagels on the prepared baking sheet and apply a thin layer of egg wash to the superior surface using a pastry brush.
Bake for 20 to 22 minutes at 375°F until the internal structure is set and the exterior is firm.
Transfer to a wire cooling rack and allow to rest for 15 minutes to stabilize the crumb before slicing.